PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g037530.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARF
Protein Properties Length: 843aa    MW: 94276.8 Da    PI: 6.3978
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g037530.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.64.7e-23128229199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        +   +  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Sopim02g037530.0.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQT--PPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 215
                         99*****************************7444..44459************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Sopim02g037530.0.1 216 -WNEKNQLLLGIRRA 229
                         .8889999***9986 PP

2Auxin_resp115.83.7e-38254337183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+t+s F+v++nPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrW nS+Wrs+k
  Sopim02g037530.0.1 254 AAHAAATNSCFNVFFNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWANSHWRSVK 337
                         79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-49112257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-41121243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.58E-21127228No hitNo description
PfamPF023622.6E-21128229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.055128230IPR003340B3 DNA binding domain
SMARTSM010191.1E-23128230IPR003340B3 DNA binding domain
PfamPF065072.3E-33254337IPR010525Auxin response factor
SuperFamilySSF542771.05E-6714790No hitNo description
PROSITE profilePS5174520.781716800IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MKLSTSGMGQ QAHEGGEKKC LNSELWHACA GPLVCLPTVG SRVVYFPQGH SEQVAATTNK  60
EVDAHIPNYP NLSPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPEEQKD TYLPVEFGIP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QTPPAQELIA RDLHDVEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAV RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSCFNVFFNP RASPSEFVIP LSKYIKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI GDLDPVRWAN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSLF PLRLKRPFYQ GTSSYQDSNN EAINRMSWLR GNAGELGHHS MNLQSFGMLP  420
WMQQRVDSTI LPNDINQHYQ AMLATGLQSF GSGDLLKQQL MQFQQPVQYL QHASTENSIL  480
HQQQQQQQQI MQQAVHQHML PAQTQMLSEN LQRQSQHQSN NQSEEQAHQH TYQEAFQLPH  540
DQLQQRQPSN VTSPFLKADF ADLTSKFSAS VAPSGVQNML GSLCSEGSNN SLNINRTGQS  600
VIIEQSPQQS WMSKFTESQL NTCSNSSSLP TYGKDTSNPR GNCSLDSQNQ ALFGANIDSS  660
GHLLPTTVSN VTTTCADMSL MPLGASGYQN SLYGYVQDSS ELLHNAGQID PPNATHTFVK  720
VYKSGCVGRS LDITQFHSYH ELRRELGQMF GIEGFLEDPQ RSGWQLVFVD RENDILLLGD  780
DPWEAFVNNV WYIKILSPED VQKLGKEEAE SLNRGAVERM SSTNADDRDL ISGMPSLGSL  840
EY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601535845388Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6673420.0EF667342.1 Solanum lycopersicum auxin response factor 8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231633.10.0PREDICTED: auxin response factor 8
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLK4B5U70.0K4B5U7_SOLLC; Auxin response factor
STRINGSolyc02g037530.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38572339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8